Protein Info for Echvi_1495 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 transmembrane" amino acids 20 to 36 (17 residues), see Phobius details amino acids 43 to 65 (23 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 171 to 188 (18 residues), see Phobius details PF13795: HupE_UreJ_2" amino acids 7 to 159 (153 residues), 173.4 bits, see alignment E=2.9e-55 PF04955: HupE_UreJ" amino acids 8 to 117 (110 residues), 23.5 bits, see alignment E=3.6e-09

Best Hits

KEGG orthology group: None (inferred from 59% identity to mtt:Ftrac_1744)

Predicted SEED Role

"FIG00906845: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYC3 at UniProt or InterPro

Protein Sequence (193 amino acids)

>Echvi_1495 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MSQFRAYFNLGLEHILDLNGFDHILFVIALCAIYLLRDWKKILVLVTAFTIGHSITLALA
TLKIFSVNANLIEFLIPVTIAVTAFFNILKPRPSSGSGIQANYAFALFFGLIHGLGFSNY
LRSLLGRESSIWEPLLAFNLGLEAGQLIIVGIFIVISSITIGIFGTNRKEWALVISAIVL
GMSIMMILDKVYW