Protein Info for Echvi_1477 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: phytoene desaturase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03486: HI0933_like" amino acids 5 to 39 (35 residues), 23.3 bits, see alignment 1.2e-08 PF00890: FAD_binding_2" amino acids 6 to 44 (39 residues), 30.5 bits, see alignment 1.1e-10 PF01266: DAO" amino acids 6 to 135 (130 residues), 37.9 bits, see alignment E=7e-13 TIGR02734: phytoene desaturase" amino acids 6 to 490 (485 residues), 447.7 bits, see alignment E=2.6e-138 PF12831: FAD_oxidored" amino acids 7 to 120 (114 residues), 30.4 bits, see alignment E=1.2e-10 PF13450: NAD_binding_8" amino acids 8 to 65 (58 residues), 58.6 bits, see alignment 2.7e-19 PF01593: Amino_oxidase" amino acids 13 to 487 (475 residues), 124.5 bits, see alignment E=3.4e-39

Best Hits

KEGG orthology group: K10027, phytoene dehydrogenase [EC: 1.14.99.-] (inferred from 61% identity to sli:Slin_5960)

Predicted SEED Role

"Phytoene dehydrogenase (EC 1.14.99.-)" in subsystem Carotenoids (EC 1.14.99.-)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXG8 at UniProt or InterPro

Protein Sequence (498 amino acids)

>Echvi_1477 phytoene desaturase (Echinicola vietnamensis KMM 6221, DSM 17526)
MGNDEAIVIGAGFAGIAAATTLAAQGFQVTVLEKNDSAGGRARKFSAEGFTFDMGPSWYW
MPDIFEQYFARFGKHPRDYYDLVRLDPSYKVIFGEQDNWLMPADFEALQALFESVEPGAG
LRLQQFLDQAARKYKVGIQDWVYKPCQSVWEFAQPGIFNDLIRLDLFQTMQKHVRSYFKH
EKLVQIMEFPVLFLGQTAAKIPALYSMMNYADLVLGTWYPMGGMHEIIRAMVSLAEEKGV
HFEYQATVSHINTLNGKATSVALEDGRKFSADVVIAGADYHHVETKLLPPGAANYSDRYW
DKRTLAPSSLIFYLGVEERVDHLQHHNLFFDEPLGPHAKAIYDQPEWPEKPLFYVCCPSK
TDPSVAPKGKENLFILVPLAPDLEDTEEKREAIYDLVMKRLEKHTGQAVREKVCFKRSYA
HRDFIEDYNAFKGNAYGLANTLGQTAMLKPKIRNKKISNLFYTGQLTVPGPGVPPSLISG
QVVADEIVKAYLSTSLQH