Protein Info for Echvi_1409 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: DGQHR domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 764 PF14072: DndB" amino acids 226 to 387 (162 residues), 46.3 bits, see alignment E=1.7e-16 TIGR03187: DGQHR domain" amino acids 228 to 528 (301 residues), 169.1 bits, see alignment E=8.8e-54

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWJ5 at UniProt or InterPro

Protein Sequence (764 amino acids)

>Echvi_1409 DGQHR domain (Echinicola vietnamensis KMM 6221, DSM 17526)
MSYQEELFKELLDENSIKVKLRYRKSKYQYKSIKKSELKEHLDSGWEIQRRNKNSFRVKT
LKPTDEWFEDRVWTLFAKMGFNYMNSDRNFRLKYTKDNLIPGKQIDVFAVDDETIFIVEC
KTSKKRKSKSFQSEINEINGIRGNIIPKLQRAFEGKRKIAWLFCTENIVLSDNDKSRLKE
HNIFYLNQDDINYYEQLIDQLGISAKYQMFARIFANQEIPEIKNKVPAIRGKMGGYTYYS
FSIEPDTLLKISYILHRINTSDDTLSTYQRMVKKSRIKQIDDFLGGENNFFPNAIIINID
TKRGKPLDFNLADAGQHDSKSKLGVLHLPKRFKSAFVIDGQHRLYGYGNNNYRFTHTIPV
IAFENLPSDKQANLFVEINHKQKSVPANLLKSLDAELKWDSPIPDDAIRALKSKLAQRLN
ERDESPLYNRIIIGEEKSTQTKCITLTYVFDYGLNKTNLFGEISNRSLIRTGPLYAGDLA
EKTLEKAYTFFKLFFELIEEKLTDQWELGNGEGGFVARNIGVSSFIVISWDIMEYLGKIK
NMAFEKSKADEIFDEFKPFLILIIEFIRNLSPDDLYNMSRQWGSTGVSKVRREFQRVIHE
KHADFTPDGLSQYIKESSGVYNDETRANIFQIQEAIKEHIFSTLKNEYGDSPEKWWRLGI
PKQIQKDCAVKAVEADPPEPPENFLLVLDYQRIIKDNWKLLGDIYTSPDQKQGNKEAKIS
WFVKFNTIRNRVMHPERKDVTEEEYNLVKEVKKWLLDRISVVSS