Protein Info for Echvi_1324 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1169 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 135 to 1169 (1035 residues), 787.1 bits, see alignment E=3.3e-240 PF13620: CarboxypepD_reg" amino acids 135 to 205 (71 residues), 49.3 bits, see alignment 1.1e-16 PF13715: CarbopepD_reg_2" amino acids 136 to 216 (81 residues), 69.2 bits, see alignment 5e-23 PF07715: Plug" amino acids 224 to 341 (118 residues), 63.7 bits, see alignment E=4.2e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 318 to 347 (30 residues), 56.8 bits, see alignment (E = 1.4e-19)

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FY86 at UniProt or InterPro

Protein Sequence (1169 amino acids)

>Echvi_1324 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKKLYSLYSLGRFCLVGLVLQVFLISTLHAEGYANQDPKDLNEIMVSLEANNASMEDVL
ATLKSKTDFSFVYNKGMVSKLEPVNMHVTNESLEQVLLQLATSHKLSFQQVNDRISVKAA
ETPAAEVTRAAARVTITGTVTDEEGGSLPGATVSVVGTSRGTVTDADGKYSIDVDEGETL
QFSFIGFEKQQVVVGKQSVINITLELDDNSLEEVVVTGYGEVKKEHLTGAVETIDPEEFQ
DLPTGNLSAALAGRVLGVGVSGGNTRPGTAASLTIRNPQSFSKDGGNNSPLYVIDGVIQI
AADGSNDNVRFNNLDPAEIESISFLKDASAAIYGSRGANGAVIVTTKRGRDGKPRFSYSG
SYGVNDEAYRTKMLSAYDFGMYYNIMNGPNGSGEYADSEPENYVFSQDEIDHFRTINYDW
LEQAWSPASNMRHNLNVSGGTDKANYFASASYFTQDGNLSTLDYDRWNFRAGADIEVADG
LKAGLQVAGYYSDKTKTFNKIGGENDENDYKNLLLTPRYIPPYVNGFPVDLPDGGTGDYH
FFEIQELDNLATDTDMNMSVNLFAEYEMPFLEGLKARISYGRNMGSSRGTQVGTRYRLYQ
FEGLGEYGHIYDGAEVSGSREYKNGDRLYYSNDNFISTQTNFTVNYANDFGQHSVSALFS
IERAEAENSNEWVRKEEPASFTNGQFSSAFGEIDGWTRGSESGSLGYIGRVNYSFANKYL
AEFLFRSDASTKFAPENYWGKFYSLSAGWIISNEDFFTASWIDFLKFRYSAGLLGKDDTK
AWQWRQRYTFQNGKGAVFGGDNDAGIGMKMESSPNRDATWSDDFKNNFGIDARFLNSRLS
ATVEAFYNKGTNLLMERTGNVPVTVGGTVAAENFGEIDFFGYELSVGWNDQVGDFRYGID
GRFSWYDNKVKVSNFNEIDILYPWNAQPNASTDRGVWGMDYLGMFKSQEDIDAYVEQYDI
TQVFGTVVDELKPGMLYYRDVRGQLQSDGTFAEPDGIIDENDQVQLAKRESNHYGYGMTI
KLGYKQFSLNAVIAGSFGGWSEYDARNAMEQEIPDSYESVPAFWGDIYDPELNPTGKFPN
PYWEDISLNPRSEFWRVSGFRMAMRNVDVSYRLPKHVADKLKISSARIYFNILNPVNFYN
PFSYKSSVGGSWDNYPVLRTYSLGLNLSL