Protein Info for Echvi_1313 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Heme/copper-type cytochrome/quinol oxidase, subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 33 to 58 (26 residues), see Phobius details amino acids 70 to 86 (17 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUM6 at UniProt or InterPro

Protein Sequence (215 amino acids)

>Echvi_1313 Heme/copper-type cytochrome/quinol oxidase, subunit 3 (Echinicola vietnamensis KMM 6221, DSM 17526)
MSMSLTKPSHDEMKKRNFPSMIKKAESLHPYQLLVYLAMVSSGIIFLFLAVAFVVTAIDN
PVVNGEQLPWPFWVSTFLIVSSNFWTRKLVHSLENDQPLFVKQTLWTVFLVGFMFVGFQG
WGWIALTEQGVLFTAIPSGSYLYVLTGIHMLHLLGAMVFVLLMIYEVKQVMANPIKGLVF
RKNPYVDMKVKLFVLYWKFVEIVWLVLFLLFVLAL