Protein Info for Echvi_1311 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: gliding motility-associated lipoprotein GldJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03530: gliding motility-associated lipoprotein GldJ" amino acids 12 to 406 (395 residues), 680.5 bits, see alignment E=3.4e-209 PF03781: FGE-sulfatase" amino acids 79 to 400 (322 residues), 136.4 bits, see alignment E=7e-44

Best Hits

Predicted SEED Role

"GldJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWB3 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Echvi_1311 gliding motility-associated lipoprotein GldJ (Echinicola vietnamensis KMM 6221, DSM 17526)
MVKSNKNTTIIMAAFLMLSMTFLASCAKNNGPTYGRRTAGNPGKVSAATGAELNFDLDDT
TQFTVVKLKEPAKGPKLKYIQGGRAVLGTQEQDVMAFRDNAERTVTIASFYMDETEVTNL
DYKEFLFDMKKRASADSVNRLEPREDVWTEALSYNDVYSTYYFRHPGFNFYPVAGVTWEQ
ANAYCKWRTAYVNELYREKEGLDSTMSKNLLIERGVVLPSYRLPNEAEWEYAAKAMIGTQ
YLDENQENGRIYPWDGRGVRNPYDVKRKGRQGDLLANFKRGRGDYAGIAGGITNDGDIIP
ANVYEYPPNDFGLYNMSGNMNEWVEDVYRPLSYQDFEDLNPLRRDGTNDSEEAYRTTLID
DNYRVYKGGSWRDVAYWLSPGTRRFMHQDSATNHIGFRCAMISVGADDM