Protein Info for Echvi_1251 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ribonuclease, Rne/Rng family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 TIGR00757: ribonuclease, Rne/Rng family" amino acids 15 to 445 (431 residues), 448.2 bits, see alignment E=1.5e-138 PF10150: RNase_E_G" amino acids 143 to 413 (271 residues), 334.8 bits, see alignment E=2.1e-104

Best Hits

KEGG orthology group: K08301, ribonuclease G [EC: 3.1.26.-] (inferred from 68% identity to mtt:Ftrac_2594)

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.26.- or 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FW62 at UniProt or InterPro

Protein Sequence (523 amino acids)

>Echvi_1251 ribonuclease, Rne/Rng family (Echinicola vietnamensis KMM 6221, DSM 17526)
MSTELVIDSAQNGSRIALLKNKGLVELHSDEENNQFKVGDMYLGTVRKIVNGLNAGFIDV
GYEKDAFLHYQDLGPKVKSLIKYTKQIRNNHSEHPTLKGFKLEPEIEKLGKISQVLSKNN
QILVQVVKEPISTKGPRLSCELSLAGRYLVLVPFSNAVNVSKKIRKAEERRRLARLITSI
KPENFGVIIRTVAESQSVTELDKDLRNLVNTWEDGMKKLMKAKSKDKVIGEMSMASSIVR
DLLNESFDAITVEDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKLFESFGIEKQIKSLFG
QSVSLPHGGYLIIEHTEALHVIDVNSGNKSNQESDQETTALKTNLVAVKEIARQLRLRDM
GGIIVIDFIDMKKADNKRAVYDAMKTAMKEDRSKNTVLPLTKFGLMQITRQRVRPEVNIV
TKETCPSCNGTGKIQASILVADKLERDLEYTAVHQNLPNIKIGLHPYLHAYFTQGMISKR
VKWFFKYFKWVKLIKDSSLPVTEYKFLDETGEEIELTVKDGAE