Protein Info for Echvi_1230 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1058 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 50 to 121 (72 residues), 47.2 bits, see alignment 3.6e-16 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 50 to 1058 (1009 residues), 652.3 bits, see alignment E=1.8e-199 PF13715: CarbopepD_reg_2" amino acids 51 to 132 (82 residues), 69.2 bits, see alignment 3.8e-23 PF07715: Plug" amino acids 141 to 266 (126 residues), 65.7 bits, see alignment E=7.7e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 242 to 272 (31 residues), 63.1 bits, see alignment (E = 1.6e-21)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXP3 at UniProt or InterPro

Protein Sequence (1058 amino acids)

>Echvi_1230 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MNFESLPLFKPVAMLALVGSFLQPIAAEHTYAGEMTGKLPPSAVNMAEVTVTGTVTSSED
GAPIPGVSVTIVGTSKGTITDFDGNYSINTEEGQTLKYSYLGYTPQTITVGSQTTIDVVL
EQDTEELSEVVVTAFGIEKDKKSLGYAVQKVDGEDITTVKASPSAVSNLKGRVAGVNITE
SGSGPGSGVRVIIRGNNSLTQSNQPLYVVDGIPMDNSSTSEGGDMYTSTNTGSGISDLNP
DDIESMTVLKGPNAAALYGSRAANGVIMITTKKGKNRKGIGVDFSSSSVFSNPMLLPEFQ
NEYGQGTQGRTPATMEELRTNGGSWGGPLDGSEQLYWDGTTKPYSAQPNNVENFFNTGGN
FVNTVALTGGNEKVSARFSYTNTYNEAMVENSFLKRNNFNLRATAKLSSKLSLDAKATYT
SQFTRNRVNQGSEGLLAGVYSIPRNAIMDDFRDYRDEETGLVRNYAESASNPYWTLNYDK
AEDTRNRFIGFAKVQYQFTDWLSAHARIGTDWTDIRFESATQPGHWFYPDGRVGFSNNRY
QETNADFLFMIDKNITEKLRVTANIGGNHLQQLSQGMSLNGQNLRIPTKTTIGSADQVNY
SAGVPTERVTNSLYASASFDYAGIVFLDVTGRNDWTSTLPSNSWSYFYPSVNLALMVSEF
IDPDQTLMDYLKLRGSWASVGKDASAWRLQNSYNLKNKNNSYLGITTLTIPSVWYDQNLS
PEFTKTYEIGLDGSFLRNRLYFDFAYYDISSTDLIDIVETDNLAVNPLGRAEVHTNVGEI
TNKGVEVMLGGTPIKNERFTWNTNVNFSHNRNELKEFLPDAFNRQWNVNNSGSAETRATV
GAGYGEIWATDIMTDPETGEWILTANGMPQATAQRVKVGDFQPDYLLGFNNSFSYKDFTL
KFLIDGRFGGEMYAATQAAMDGAGISKKTLEYREEGIIVDGIIENEDGTFSDNSQSITAQ
QYWGAMSGIGSNYIMDQTNVRLRELSLTYRIPTSFLGNSVVRSASISFIGRNLFFFYKAF
DGGFDPESTLGTSNAGQGYLYYAMPTARSLGFNLNVKF