Protein Info for Echvi_1226 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Na+/proline symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 332 to 357 (26 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details amino acids 443 to 462 (20 residues), see Phobius details amino acids 480 to 498 (19 residues), see Phobius details amino acids 541 to 562 (22 residues), see Phobius details amino acids 567 to 587 (21 residues), see Phobius details PF00474: SSF" amino acids 36 to 451 (416 residues), 115.5 bits, see alignment E=1.4e-37

Best Hits

Predicted SEED Role

"sodium-solute symporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FW38 at UniProt or InterPro

Protein Sequence (593 amino acids)

>Echvi_1226 Na+/proline symporter (Echinicola vietnamensis KMM 6221, DSM 17526)
MNISPIDWGIIAAFFIISLLIGLFTSKSAGKSSKDFFLSGRNMPWWLLGVSMVATTFSAD
TPNLVTDIVRVNGVSGNWGWWCFLLTGMLTVFVYAKLWRRSEITTDLEFYELRYGGKPAA
FLRGFRAIYLGVFFNIMIMATVSLAAIKIGGVMLGLTPVQTLLIASIVTVIYSSLGGLKG
VLLTDFFQFFIAMAGAIGAAIYILDLPQIGSLENLLTHPNVSDKLSFFPDFSNMNEVIPM
LLVPIAIQWWATWYPGAEPGGGGYIAQRMLSAKNEKNAIGATLFFNVAHYALRPWPWIII
ALSSLIIFPEIGDLQKAFPHMPADKLGNDLAYSAMLTYLPTGLIGIVLASLIAAVMSTLS
THLNWGSSYVVNDFYLRFVKPDASDKELVNVGRISTVVLMGLAALLALALSNALEAFNIL
LQIGAGTGLIFILRWFWWRINSYTEISAMIISFIVALFFETINPKFNIINIPEGMEYLKL
LYGVSITTATWLTVTLVTKPEKDEVLLSFYKKVKPAAYGWKKVLNKYPEVEAEQGQLPFE
IGLMVTGSVAIYSALFAIGFWLYDNVLSASIATVISAIGFFILFKSWNKIKLF