Protein Info for Echvi_1153 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: tRNA and rRNA cytosine-C5-methylases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 PF17125: Methyltr_RsmF_N" amino acids 9 to 92 (84 residues), 82.2 bits, see alignment E=4.8e-27 PF01189: Methyltr_RsmB-F" amino acids 103 to 299 (197 residues), 129 bits, see alignment E=2.9e-41 PF13636: Methyltranf_PUA" amino acids 411 to 459 (49 residues), 71.9 bits, see alignment 5.4e-24

Best Hits

Predicted SEED Role

"tRNA and rRNA cytosine-C5-methylases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FU45 at UniProt or InterPro

Protein Sequence (465 amino acids)

>Echvi_1153 tRNA and rRNA cytosine-C5-methylases (Echinicola vietnamensis KMM 6221, DSM 17526)
MTSQDSPKLPKAFEQQMASILEADEYSLFKAALLSPSNTSIRINPRKSSPLSADTTPVPW
NSQGFFLPQRPKFTFDPLFHAGAYYVQEASSMFIGHILNHLQAPKEGLYLDLCAAPGGKS
SLLADYIGEEGMLVANEVIKTRASILKENMIKWGLGNTVVTNNDPSHFEPLEGLFDVVLV
DAPCSGEGMFRKDVQAREEWSPENVKLCAARQQRILDQTGALPGPEGYLIYSTCTFNQQE
NEDMIRFLTEEFAYEPVRIPLNPDWGIVETETDTEWGTFYGYRFFPHMVSGEGLFITVFK
RPSDAHVQEPKKMKDFKHILLQRTNKAEKHQLREELKLDETVDFYKLKKSFFALKGFWAK
YFELLATTLNVKYFGTELGKFNKGQFIPTHDFAVSILPKNFPKHEASLEAAHSYLKKDEL
ELDISQDGWVLLTYQHLPLGWIKNIGNRINNYYPKEWRIRMKLME