Protein Info for Echvi_1104 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane receptor proteins, mostly Fe transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 753 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF07715: Plug" amino acids 114 to 220 (107 residues), 57.3 bits, see alignment E=2.1e-19 PF00593: TonB_dep_Rec" amino acids 298 to 716 (419 residues), 129.7 bits, see alignment E=2.9e-41

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 42% identity to sli:Slin_1763)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXI9 at UniProt or InterPro

Protein Sequence (753 amino acids)

>Echvi_1104 Outer membrane receptor proteins, mostly Fe transport (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRLPYCLFLFLLSAFPLALMGQTSLTLIDAESGEAIPSAIANLDNGTKHISDERGQISL
DLAEKTNALFTHISYEPFRGIIIPDSAATIKLIKKTNSLSAVTVTSFESERGLMEQAAAV
SKVDQAELYRFNETAIVHALNTKPGIRLEQRAPGSYRVSIRGSSLRAPFGVRNVKIYWDG
IPFTAPDGTTALNLLDLTNIQGAEIIKGPAGSIYGAGNGGVISFTPGSVTQNKAEVSTMG
GSYGLLKYRVGVDQMLESGSLSASYVTQQSDGYRDHSALDRSVFQLQGRFEPSDHQRLTT
QLLYADLFYEIPGGLTADQVAENPRQARPGAAEQNASIKQKTLYGTLSHHYEFNDHWSNH
TTLYLQTTDFENPFNLDYKRETQYGYGARTRFTLDDQWGAFPVRVLFGGEYQFANTSAQN
FGNRNGQADTIRFADDLITTQGFLFQQIEINWTSSLLMTIGLSENFSRYDITRTVDASPS
GNPYAAARTFDPVVVPRIGLSGQLTANAAVYGSISSGFSPPTIDEVRTNEGSINLDLQAE
KGINYEIGYRGEYLNGKVQLDASAFFFQLDETITTYTNSQGVVLFRNAGATDQKGIEAQL
DYYLLQHPMGFIQELKLGHSYSFHHFRFKDYVNDGEDFSGNALTGVPPHNLVNKLDLISR
NGLYLNVTYQWVDEIPLTDDNTVMQDPYQLMNARLGWRKNFGSAWQVELFGGVDNLLNEQ
YSLGNDLNAYGGRYFQPAAARNYYGGVKVKMRY