Protein Info for Echvi_1092 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized low-complexity proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 PF13599: Pentapeptide_4" amino acids 26 to 84 (59 residues), 48.8 bits, see alignment E=1.1e-16 amino acids 89 to 152 (64 residues), 44.8 bits, see alignment E=1.9e-15 PF00805: Pentapeptide" amino acids 28 to 67 (40 residues), 38.3 bits, see alignment 1.2e-13 amino acids 50 to 84 (35 residues), 23.1 bits, see alignment 6.5e-09 amino acids 95 to 133 (39 residues), 19.7 bits, see alignment 7.7e-08 amino acids 122 to 155 (34 residues), 25.2 bits, see alignment 1.5e-09

Best Hits

KEGG orthology group: None (inferred from 50% identity to ppn:Palpr_1540)

Predicted SEED Role

"pentapeptide repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWE2 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Echvi_1092 Uncharacterized low-complexity proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MKTAYFEAKEFFEEDFSTGFPTGEYEECRFVRCNFAEVNLRDVVFSECTFEHCNLSNAQL
QNTSLRDVEFSSCKLLGLRFDKCNPFLLTATFVESQLDYASFYGLKMKQTTFRSCKMQEV
EFVETDLTGSVFDQCDLRQAVFDRALLEKADFRTAENFSIDPERNQLKKAKFSLATVTGL
LDKYDITVR