Protein Info for Echvi_1061 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 581 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details PF13205: Big_5" amino acids 35 to 135 (101 residues), 53 bits, see alignment E=7.6e-18 PF14686: fn3_3" amino acids 182 to 210 (29 residues), 29.2 bits, see alignment (E = 9.6e-11)

Best Hits

Predicted SEED Role

"FIG00907411: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVJ5 at UniProt or InterPro

Protein Sequence (581 amino acids)

>Echvi_1061 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MSNRNHYIPIFSLLIGIIFCYACAKQSSPMGGPKDEDPPVLLSSNPKDQSLNTKPENVTL
VFDEYIKTENPQRNVIITPSLDKSKMEFLALKNELRIKIGQELEDSTTYVFNFQKSIQDI
SESNPSENLKLVFSTGDMIDSLRFIGKVAYIFPQKTPDMEDVIVGLYRIEDDTMDVFSDP
PYYLTQTDSAGNFEITNIKAGKYRAYAWHDANNTSKAEDKSEPYGFIADTINIMKDVAGS
YFNLYKGDLSEFKINRTTAIGSTFDVVLSKYPAKLTVTHPDLGKSLFYRINEKNIRFYHT
TLRDDSTQVSLSLRDSVGFGVDTTFYASFMSSDRRSENLTPTMDKNKEFISNIKTSISFN
KPIKDIVYDSLFIQYDSASYINIKPEYLSFKDSSLRATILMDIPVLDSIQKTSFQFYASD
STFIDIEDQINEKAIKTTFSRQDPENLADEVTGKVMAEEWPILVQLLSKDGTIIRETVLE
QDQQTYSFKKIKAGEYMVRAIIDRNKNGQWDPGNYIERRQPEPVYYYFDNENMSYNILLR
GKWTNQNINILPSPASGILQVTTDNTPTDTIPKEQNSAEGL