Protein Info for Echvi_1024 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted DNA alkylation repair enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 PF08713: DNA_alkylation" amino acids 9 to 220 (212 residues), 214 bits, see alignment E=1.1e-67

Best Hits

KEGG orthology group: None (inferred from 60% identity to fbc:FB2170_07649)

Predicted SEED Role

"DNA alkylation repair enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXB1 at UniProt or InterPro

Protein Sequence (225 amino acids)

>Echvi_1024 Predicted DNA alkylation repair enzyme (Echinicola vietnamensis KMM 6221, DSM 17526)
MKVYLRTLENEFRRHGNSVIAKGQKAYMKNHFEFIGLKTPLRRKLQKPFLEKAALPAKHE
LGEIVEVLWHMPEREFQLFAQELVWKYFKKPEKGDIDLLEYMIVHKSWWDTVDFIAVKLV
GNYFWVYPEEIQPYVDKWMATDNIWLQRTALLFQHNYKDKLDTQLLQDMIDRLLGSKEFF
INKAIGWILRQYSKTDPKWVKTFVDNTDLAPLSKKEALKNVDKYK