Protein Info for Echvi_0986 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Rrf2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 TIGR00738: Rrf2 family protein" amino acids 13 to 147 (135 residues), 113.5 bits, see alignment E=3.3e-37 PF02082: Rrf2" amino acids 14 to 148 (135 residues), 129.6 bits, see alignment E=4.2e-42

Best Hits

KEGG orthology group: None (inferred from 72% identity to cpi:Cpin_2027)

Predicted SEED Role

"Rrf2 family transcriptional regulator" in subsystem Flagellar motility or Rrf2 family transcriptional regulators

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVC3 at UniProt or InterPro

Protein Sequence (150 amino acids)

>Echvi_0986 Rrf2 family protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MGGFQELFYFCKMLSKKTKYAFHALTYLGKHKEDGSVLIQDIAAEHGISHKFLENILLEL
KKAGFLGSKKGKGGGYYLIKEPKDIPLSRIIRLLDGPIALLPCVSLNYYEACEECRDQEK
CGLNQVMIQVRDETLNILENKTLADILDKE