Protein Info for Echvi_0971 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 transmembrane" amino acids 23 to 48 (26 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details PF05656: DUF805" amino acids 11 to 117 (107 residues), 126 bits, see alignment E=4.7e-41

Best Hits

Swiss-Prot: 44% identical to YHAI_ECOLI: Inner membrane protein YhaI (yhaI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 59% identity to lan:Lacal_1732)

Predicted SEED Role

"protein of unknown function DUF805"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVA7 at UniProt or InterPro

Protein Sequence (126 amino acids)

>Echvi_0971 Predicted membrane protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MEYYKKVLNHYADFTGRARRKEYWMFVLVNFLVMMVVGIISGLLSTAFSSEVPFVLFYGA
YSLAILVPTLAVTVRRLHDIGKSGWMYFVGLIPLIGGIWLLVLLVTEGNHGPNQYGEDPK
NAEKVF