Protein Info for Echvi_0949 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted glycosyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 260 to 279 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 6 to 225 (220 residues), 58.4 bits, see alignment E=2e-19 PF00535: Glycos_transf_2" amino acids 10 to 180 (171 residues), 60.4 bits, see alignment E=4.4e-20 PF13632: Glyco_trans_2_3" amino acids 89 to 223 (135 residues), 51.1 bits, see alignment E=3.3e-17 PF11397: GlcNAc" amino acids 146 to 218 (73 residues), 22.5 bits, see alignment E=1.4e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FV87 at UniProt or InterPro

Protein Sequence (301 amino acids)

>Echvi_0949 Predicted glycosyltransferases (Echinicola vietnamensis KMM 6221, DSM 17526)
MGKATPSVAIIVLNWNGYGHTKNCLKSLQVAEMEDAEVIVVDNASEDGSAARLQAEFPQH
TYLLNDQNLGFTGGNNVAIKHALERNIPYIMLLNNDTEVVPGFLTYLMDELKGNAKLAAV
QPLMYYLHDREKVWNAGGRYHRWTGGSTSITQKQALSSPYPTDWITGCCILARAEVIREV
GLLNEHYFAYFEDVDWSLRMRKHGYGLAVVPAAVIYHEAGASSKAKKKGKEGVLSPKVHY
LNTRNQLFQLRNHVRFPHGLVAWPVQLAKLALYALYFLVRRRMEKLRALGKGLSDGLSLK
C