Protein Info for Echvi_0947 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 transmembrane" amino acids 66 to 86 (21 residues), see Phobius details PF20706: GT4-conflict" amino acids 163 to 307 (145 residues), 44.6 bits, see alignment E=1.5e-15 PF00534: Glycos_transf_1" amino acids 188 to 352 (165 residues), 107.7 bits, see alignment E=7.2e-35 PF13692: Glyco_trans_1_4" amino acids 191 to 338 (148 residues), 88.3 bits, see alignment E=8.6e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FX44 at UniProt or InterPro

Protein Sequence (373 amino acids)

>Echvi_0947 Glycosyltransferase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKRILIDIYYLHVAQTGIRTYTESLIEATERSGKDGPFDYIISPKYSSLKSSTFFKGKT
PKWKNLLFQLLYFLRKAVVLPILTYWHRSDMVFSPDILSPLWARGVKVSVLHDAFFWENP
DHYNPHWRKYFLGLLSFSLRTNAEVVTITEYSKKQLQHYLDLPKLPIHVVYPATNVAAKP
ESNVPSPLASPYFLHVGVMEKRKNLVTLIQAFDHFRKAGGYPDFKLVLVGQRGPRRDLDD
YENVLQEIDRLALKEQVILPGFVSREVLESYYHHASAYVFPSCSEGFGMPVLEAFSYQLP
VIISRQGALMEVGGDAVIYPRDHSADAFAEVMRRVVQDVPLRTSLIEKGNKRLASFGGQR
FLDDLEKCFLRML