Protein Info for Echvi_0927 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycogen debranching enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 944 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF08531: Bac_rhamnosid_N" amino acids 209 to 376 (168 residues), 199.2 bits, see alignment E=9.6e-63 PF05592: Bac_rhamnosid" amino acids 389 to 472 (84 residues), 83.7 bits, see alignment E=1.5e-27 PF17389: Bac_rhamnosid6H" amino acids 499 to 832 (334 residues), 337.1 bits, see alignment E=2.8e-104 PF17390: Bac_rhamnosid_C" amino acids 835 to 908 (74 residues), 75.7 bits, see alignment 4.1e-25

Best Hits

KEGG orthology group: None (inferred from 60% identity to fjo:Fjoh_4085)

Predicted SEED Role

"alpha-L-rhamnosidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FX23 at UniProt or InterPro

Protein Sequence (944 amino acids)

>Echvi_0927 Glycogen debranching enzyme (Echinicola vietnamensis KMM 6221, DSM 17526)
MKVEKNYTEPLALMQAWLFLLIAVVLFSGCDSGPRGTLLQVTNITTELADNPMNIEKTAP
RFGWELVSDANGARQTAYQVVVSHSASEDEAAVVWDSGKITSGQSQLIPYEGGPLINGER
YFWKVKVWNEAGISSDWSNMAFFEMAPYELEKGAQWIGAITRAESGLPAGRNYHEPDMRR
EENKEKWSKVKPLAKRSIQLRKPFEVESEIEKATVYISGLGHYELKLNGEKVGNSEFAPL
WSDYDKTVYYNAYDVTERLVSGENAIGVLLGNGMYNVSGDRYAKFLISFGPPTLFFHLKI
TYADGEEQLISSDDSWKWSESPITFNCVFGGEDYDATLEQDGWAQPGFDDRNWKPVVIQE
APKGKLCPQHASPVLVQKQYDIKATAEPEENTYVLDMGQNLAGFPSIKVKGQKGQKVKLV
VGEHLKESGLVGQGRTGGPHYYEYTLKGDEEESWQPRFSFYGYQYIQVTDVNVPGQEQQA
DRPTITEIKSNFIYNDATEEGTFESSNEIFNQTHLLINNAIKSNMQSVFTDCPHREKLGW
LEETHLNGPGLFYNYDLTQLVPKVMQDMADAQRENGLVPNIAPEYVVFGGDFTDSPEWGV
ASVVLPWMYYDYYGDSSLIQEYYPMMKKYIDYLGTTADNHIVSHGLGDWYDYGEHAAGYS
KNSPIALSATSHYYFGVKLLKKAALMLQKGVDYREYSRLEKQVKEAFNQTFFDPETNQYG
TGSQFSNAVPLFLDMVDSTKREAVLAHLVQDIEAHGYRLTTGDVGNRYLYQTLARNGLNE
VMFKMHNHYDTPGYGFQIKFGLTTLTEQWDPRKGNSWNHFMMGQIEEWFYRDLAGIQPDP
DQPGFKHFLLKPQWVGDMTFVKASYESIYGTIASSWKKEEGNAQFHFDIPANTSATLVLP
VEQSAEVRINGSRTEKAKGVSKVQADGHPSFELGSGKYSIEVKF