Protein Info for Echvi_0925 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: transporter, SSS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 75 to 99 (25 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 271 to 297 (27 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 401 to 424 (24 residues), see Phobius details amino acids 433 to 455 (23 residues), see Phobius details amino acids 477 to 498 (22 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 37 to 439 (403 residues), 215 bits, see alignment E=9.6e-68 PF00474: SSF" amino acids 37 to 437 (401 residues), 129.3 bits, see alignment E=9e-42

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 59% identity to phe:Phep_0525)

Predicted SEED Role

"Predicted sialic acid transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVY7 at UniProt or InterPro

Protein Sequence (526 amino acids)

>Echvi_0925 transporter, SSS family (Echinicola vietnamensis KMM 6221, DSM 17526)
MDASLHWIDYLLIVVSILGTIYMGIYFSKRQKSSEDYFAGGGGIPSWAIGMSIFATLISS
VTFLAYPSAAYKSNWILLVQGLMVPIVLVCMIWVIVPLFRRVIGLSTYEYFEKRFGFFAR
LYSSLAFVLTHFSKMGTVLYLVSLALSSMMDVNIFMVIGVLTFVIIVLTLLGGIEAVIWM
DVIQGFLLIGGGLFCLGLLLFVPEGGPERVMEEAISMKKIGFGPYDIDFTQLTFIVMVVN
GIFYAIQKYGTDQTIVQRYLTARNDREAKKAAYMGVFLSVPVWALFMLIGSLLFVFYQIS
GSVLPEGTSVDAVFPYFIMTELPPGVTGLVLAALAAAAISSLDSDMNCLAAVGVEDYYKR
FNPNCNTHQKLKVGRILVLISGLAAAGVAVLYVLWQGEGVLGAVFGLYAIFSAGIVGIFL
LGLFSRRANKEGLYVGIVACILFTAYALLTSTPMSFGGGEKTLLLDLGKFNFNQHKYMLG
VYSHLIVLIVGYIASLFFKRPPADENLTIYGYFKQKQKMERAKEVV