Protein Info for Echvi_0890 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details PF00512: HisKA" amino acids 199 to 263 (65 residues), 28 bits, see alignment E=1.8e-10 PF02518: HATPase_c" amino acids 310 to 420 (111 residues), 72.2 bits, see alignment E=4.7e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVV8 at UniProt or InterPro

Protein Sequence (435 amino acids)

>Echvi_0890 Signal transduction histidine kinase (Echinicola vietnamensis KMM 6221, DSM 17526)
MEIIIRNLREIKRVVLYVIVVIILSLFADAVVEWRMADHPMLYIKDLINIAIILIATLFY
RLDLIKLKVVLAVAVYSIFISIYLSIPVRLESNSLVMEAYFVKVELITILLMLVAGILIH
RHHMIYVLVINAAFIITCMIFLPVDYPASKYIFYLVLLTGAGLSGQRLQKALMELRENLA
GANAEIAKNNKKLIEVNKQKDQLFRIIGHDIRTPFNQISMVLSILSNDMDNAKFEEMKKA
METAVDNGNLLLQDLMIWAKAQATDSMAVKETVPLFPLIQKEVRFFEGQAKRKSVQINNQ
VQKGIKVFADPNMTATIIRNFISNALKFSHRDSTIEILIDKNEGFSSISVKDYGTGMKPE
DLEKLRYSEKNVVSQEGTEKEAGTGFGVRICQKLAEHQGGKVKITSEWGKGSTFSLILPP
VPLSKDTKPSKPLES