Protein Info for Echvi_0868 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized protein related to plant photosystem II stability/assembly factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14870: PSII_BNR" amino acids 33 to 123 (91 residues), 33.2 bits, see alignment E=5.6e-12 PF02012: BNR" amino acids 264 to 274 (11 residues), 13.2 bits, see alignment (E = 1.2e-05)

Best Hits

KEGG orthology group: None (inferred from 40% identity to scb:SCAB_13411)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWL0 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Echvi_0868 Uncharacterized protein related to plant photosystem II stability/assembly factor (Echinicola vietnamensis KMM 6221, DSM 17526)
MKHHIYLHIITWAFLGLTFSCNPPQATEQTSPLGWTAISTPTSASLRGLSPLTEDIAWAT
GSNGLWMLTLDGGASWKKGVIAGLDTVDFRDIEAFDASTAVAVSAGQPAVIYKTTDGGKS
WKKHYQGPEEAFLDGLAFVDDRRGYAYGDPVDGKWMVLLTLNGGDSWEPLTRTPKVPEGE
ASFAASGSGIVAKGHEIWIASGGLKSNIYYSENGGVDWDTIPAPFIQGEPSQGIFSLTFM
NKRHLVAVGGDYLDPDNTSKNSAFSFDHGKTWQTPQGTPPAGYRSGVAYFPEKSWLVAVG
PNGADYSVDGGENWTKFSDYGLHAVKLAKNEGSLWASGPEGKIAKLEY