Protein Info for Echvi_0842 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Membrane proteins related to metalloendopeptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF19425: Csd3_N2" amino acids 154 to 273 (120 residues), 51.9 bits, see alignment E=7.3e-18 PF01551: Peptidase_M23" amino acids 287 to 382 (96 residues), 100.8 bits, see alignment E=4.1e-33

Best Hits

KEGG orthology group: None (inferred from 55% identity to mtt:Ftrac_1904)

Predicted SEED Role

"Peptidase, M23/M37 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWU9 at UniProt or InterPro

Protein Sequence (432 amino acids)

>Echvi_0842 Membrane proteins related to metalloendopeptidases (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKSWIVAAGIVLLTAAGYGLYETKLKPQREVVEAEVTALESEEKAAVKEEHLLYGINVD
ELDVVEGKVARNQTLSTILAPFNVPYQIIDQIAKKSKDIFDVRKIAFNKKYTVLTSKDSS
SKAEFFIYEPNAAEFVVYKLDGKDIYKEAKPVELRKREIAGRITSSLYVNMTEQGITPDL
IDEFADLYGWSVDFQRLQKGDKYKVVYNEKVVDGQVVGIEPIQVAYFEHMGEPYYAIPFE
QNGQVSFFDLEGNSFKKAFLRDPVKFTRISSRYSLRRYHPVQKRYKAHLGTDYAAPRGTE
IRSVGDGTIIAASYTGGNGNYVKVKHNGTYTTQYLHMSKIASGIRNGVRVKQGQVIGYVG
STGLATGPHLCFRFWKHGKQVDWLNEDIPPSDPILDDNKMAFERVKTEKMDQLASIPYQE
NPEDKLLTQATE