Protein Info for Echvi_0838 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane receptor for ferrienterochelin and colicins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1050 PF13620: CarboxypepD_reg" amino acids 21 to 102 (82 residues), 69.6 bits, see alignment 4.9e-23 PF13715: CarbopepD_reg_2" amino acids 22 to 113 (92 residues), 36.9 bits, see alignment E=6.1e-13 PF00593: TonB_dep_Rec_b-barrel" amino acids 335 to 625 (291 residues), 30.6 bits, see alignment E=6.9e-11

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWI5 at UniProt or InterPro

Protein Sequence (1050 amino acids)

>Echvi_0838 Outer membrane receptor for ferrienterochelin and colicins (Echinicola vietnamensis KMM 6221, DSM 17526)
MTMLLIGVNSLYGQGITTASMSGVVEDPSGETLPGANVVATHTPSGTKYGASTRVDGRFT
IQGMRVGGPYTVEITFIGFEKAIVENINLQLGQAYRLDVVLQEEGLEIEGVEVLATRNPV
INDERTGAATSISNEQINSLPSISRSISDFTRLTPQASTAGSGTSFAGQNNRYNQFAIDG
TVNNDVFGLSSSGTNGGQTGVQPISLDAIEQVQVVIAPYDVRQGGFTGGGINAITRSGTN
NYEGSLYYYSNNQDLVGKSPDEERTKLDSYTDYQTGFRLGGPVVKDKLFFFVNGEVTSRT
QPLLYQPGSGSSNISVEEMDRVASVAERLGYDPGPYGAYSNVTSSEKIFARLDWNINRNN
KLTLRHSYVYGENIDGSRSPNSANFYNNGEFFPSTTNSTVLEWTSNISNNISNELRIGYT
TVRDDRDYLGEPFPAINVRLSGGRSINLGSEPFSTANQLDQDVLTITDNLTLYKGRHTLT
FGTHNEFYSTYNLFIRQNFGAYSYFSLEDFETVGTPGEVLPRSYDYSYSRTDNPQQGAEF
NAFQLGFYAQDEYQATRDLKLTAGLRLDIPTFSEKPSVNEQFNEEFAEYGVATDQMPGAQ
LMISPRVGVNWDVNGNGTTQVRGGVGLFTGRVPFVWLSNQYTNTGNEFGRVNLSRNEGSI
GRFSGNEDFTFVPDPYGQPDAADLGQSLTASEINVTDKDFKFPQILRVNGAVDHQFPGGL
IATFEAIYSKNLKNIDYRNLNKQEAGTLQGGPDNRVVFDSEYMNGNFNDVLLLTNTNKGY
AYNLTAQLQKNFEGGLSMSAAYTYGESKDVNGGTSSQAYSNWRYVETVNGGNNTELGFAD
NNIRSRVVAAVNYKINYKNGSSTSIGLFYNGQSGVPLSYVYNGDINNDDTFGNDLIYVPA
SADEINFVGSASEQASQWNRLNAFIEGNEYLSSRRGQYVERNGDKLPWTNQVDLRFMHEF
KLATVGETNHRLQLSFDVFNLGNLISKEWGRQYSVSNNSFSLINFEGYEDGGYVPTYSYD
GSGLSDGNPYFVSDFLSRWRGQIGIRYIFD