Protein Info for Echvi_0827 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 PF02899: Phage_int_SAM_1" amino acids 4 to 85 (82 residues), 78.7 bits, see alignment E=6.7e-26 PF13102: Phage_int_SAM_5" amino acids 5 to 95 (91 residues), 22.4 bits, see alignment E=2.6e-08 PF00589: Phage_integrase" amino acids 108 to 281 (174 residues), 131.3 bits, see alignment E=6.3e-42

Best Hits

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 48% identity to aas:Aasi_0142)

Predicted SEED Role

"Integrase, site-specific recombinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWT8 at UniProt or InterPro

Protein Sequence (294 amino acids)

>Echvi_0827 Site-specific recombinase XerD (Echinicola vietnamensis KMM 6221, DSM 17526)
MLFSFINYLEHEKRASAHTVLAYEKDLEQFKEFLEQSFETADLTQAGHGEIRAWIVDLVE
QGLSATTVNRKMATLRSFYKFLLRSGEITKDPTYKLRALKTSKKLPEFVQESTMDQLLND
LEYEAGFEGQRDKMVMEFLYLTGVRLSELIGLTWKDIDIQGKTVKVYGKRKKQRIIPLTN
TLIENIISYKKDFKETFSNVNESDYFIVTISKKQAYPMIIYRIVRKYLDLFAQTSKRSPH
LLRHTFATHLLNKGADLNAVKDLLGHANLAATQVYTHNSMEKLKAVFDQAHPKA