Protein Info for Echvi_0789 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1062 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 24 to 85 (62 residues), 39.4 bits, see alignment 1.3e-13 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1060 (1037 residues), 684 bits, see alignment E=4.6e-209 PF13715: CarbopepD_reg_2" amino acids 25 to 107 (83 residues), 71 bits, see alignment 1.4e-23 PF07715: Plug" amino acids 118 to 239 (122 residues), 63.2 bits, see alignment E=6.1e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 215 to 245 (31 residues), 62.3 bits, see alignment (E = 2.8e-21) PF00593: TonB_dep_Rec" amino acids 449 to 899 (451 residues), 70.9 bits, see alignment E=4.1e-23

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FT44 at UniProt or InterPro

Protein Sequence (1062 amino acids)

>Echvi_0789 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MRKHVLLFALLLVFSQFSFAQNSTVKGTVTSAENGEPVPGVSVLVKGTSKGAVTDLEGQY
SLEVPSEGEVLIFSFIGMATEEVSIKGRTVIDVSMSSDVKSLNEVVVTALNVSRDESSLG
YAIQSVDGDELSSVREANVVGSLAGKVAGVQVIGSSGAALGGSQNIRLRGINSLGGGSPL
FVVDGTPISNRSFSPDNDYSGRDYGNLAADINPDDIESISVLKGPSAAALYGNRAANGVI
IITTKKGTSRKGIGVEINHSTTFEKVYILPDYQNEYAGGYSQELATFDYNPETHPESWAA
FDGQQVMNYSADESWGPRMEGQMVRHWDSWYEGESFGELRPLLPNENNVRDFFETGVTMN
TGVALSGGDEETLFRLSLNHIDQKGVIPGSELLKNNVSFNGSTKLTDKLKASLNFNFTST
QGQGRPASGYTGRNPVNSFNQWFQRQLDMDRLENYKNPDGTYRTWNIRSPSNTRPLYWDN
PYYEVYENAPRDKRDRVYGNFGLTYDFTEELSVSAFARTDFFNQKIEERVASGGLDLDEY
YISQRIGREDNYEILAQYDKNFGGVSLVANAGGNIRRNFYDTMGERTQGGLSVPDFYNID
ASIDRPDVSNYYSEKTVRSVYGSVSLGYMSTIFLDLTARNDWSSALPKANNSYFYPSIST
SFVFTELMGNTNFLNFGKLRLSYAQVGSDVSAYDIAQVYDVGTPYGSLPALTVPNTYPNP
NLRPALSSSYEAGVDLRFLQRRLGLDVTYYRNDNKDQIINLTVPGSSGITQAKVNAGNIR
SEGLEVMLSATPITNQDFNWDMTLNFARNTNQVVELYQDQGNRQLQSAYWGMTLNAKVGE
PWGTLIGTGYTYDEETGLPMINPDGSYVENQNQDLGTVLPDFTGGFRNTLTYKNFDLTAF
LDFQKGGQFYSVTKMFLPYSGLAAETAGLNDLGNPKRDPVDQGGGIPVTGVVEGEGVQTV
YVDPSEHYKGLFGVHEEYIYDASYVKLREVRLGYTLPSKLMAKWPIHSANVAFIAKNLWL
IHSNVDGLDPSEFAAGGNGYSYFEAGLLPGVRSYGFNIRVVL