Protein Info for Echvi_0788 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF12771: SusD-like_2" amino acids 33 to 444 (412 residues), 389.4 bits, see alignment E=1.9e-120 PF12741: SusD-like" amino acids 114 to 395 (282 residues), 160 bits, see alignment E=1.2e-50 amino acids 398 to 474 (77 residues), 52.4 bits, see alignment E=4.8e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVM9 at UniProt or InterPro

Protein Sequence (476 amino acids)

>Echvi_0788 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MRRLINKINTGLAAGMLVMATGCSDFGDMNVNPNKPSTPLTSSLLTDAQRSVSDVIGNET
SVLYVQHISQKQYTEGSRYQTIYFNFNGYYSGPMFDLERIIDLNTDEATKGDMTAAGSNA
NQIAVARILKAYFYSVLTDRWGELPYTEALQGDEDLSPAYDTQKDIYYSLFTELTEAVAQ
MDGGTPVEGDFLLEGDMEGWEQFANSLRLTLALRLSDVDPAKAEAEFVAAYEAGILETDL
MYPYLAATNNQNPWYARFLTRVDHVISSTMVDFMKPLDDPRLGVYADPAAATGTIEGMPY
GISNAVAGEITNDEVSYLGSTARQQDAPLPIMTRSQLLFSLAEGAARGWIDESAEDLYYE
AIQASFEQWGVFDQASYDTYIAQPEVMYDSSNPYMSIGNQKWAALFLQGFEAWAEWRRLD
YPELTPAPDALNESGQIPVRQAYPTTERDLNEANYAEAVARQGEDGLDTKLWWDVN