Protein Info for Echvi_0718 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: segregation and condensation protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 TIGR00281: segregation and condensation protein B" amino acids 5 to 179 (175 residues), 138.4 bits, see alignment E=1e-44 PF04079: SMC_ScpB" amino acids 7 to 170 (164 residues), 184.9 bits, see alignment E=4.1e-59

Best Hits

Swiss-Prot: 35% identical to SCPB_PEPD6: Segregation and condensation protein B (scpB) from Peptoclostridium difficile (strain 630)

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 74% identity to mtt:Ftrac_2757)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWH7 at UniProt or InterPro

Protein Sequence (186 amino acids)

>Echvi_0718 segregation and condensation protein B (Echinicola vietnamensis KMM 6221, DSM 17526)
MEFLHRHIEALIFCSPSPLGVDEIRKCLSEMFESDVPKEHVEEAIGELQEKYLQDDFSFA
LEHLGNGYQFLTKPAYQTSISILLKQQSTKRLSTAQMETLSIIAYKQPVTKTEIEQIRGV
NCDYSVQKLLEKELVTIKGKSDSIGRPLLYGTSDKFMEYFGINSIKDLPQPKDFSQDENQ
IGKEQE