Protein Info for Echvi_0673 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted endonuclease distantly related to archaeal Holliday junction resolvase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 118 PF08378: NERD" amino acids 8 to 72 (65 residues), 27.6 bits, see alignment E=3.6e-10 PF02021: UPF0102" amino acids 11 to 100 (90 residues), 93.2 bits, see alignment E=1.1e-30

Best Hits

Swiss-Prot: 42% identical to Y059_FLAPJ: UPF0102 protein FP2501 (FP2501) from Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)

KEGG orthology group: K07460, putative endonuclease (inferred from 44% identity to dfe:Dfer_3709)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWA6 at UniProt or InterPro

Protein Sequence (118 amino acids)

>Echvi_0673 Predicted endonuclease distantly related to archaeal Holliday junction resolvase (Echinicola vietnamensis KMM 6221, DSM 17526)
MAQHNTLGSDAEAFAADFLTTKHYTLLEKNYRHKHAEIDLIMEHRGLMVFVEVKFRSGTG
FGYAEEFVDYKKRQLIIRAADHYIHEKDWHKDIRFDIVGVYKDKEGTIRFKHFEDAFY