Protein Info for Echvi_0653 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein/protective antigen OMA87

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 904 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 516 to 531 (16 residues), see Phobius details PF07244: POTRA" amino acids 127 to 204 (78 residues), 30.1 bits, see alignment E=9.5e-11 amino acids 208 to 338 (131 residues), 29.9 bits, see alignment E=1.2e-10 amino acids 341 to 425 (85 residues), 33.7 bits, see alignment E=7.2e-12 amino acids 428 to 503 (76 residues), 48.7 bits, see alignment E=1.5e-16 PF01103: Omp85" amino acids 548 to 903 (356 residues), 92.8 bits, see alignment E=4.9e-30

Best Hits

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVZ5 at UniProt or InterPro

Protein Sequence (904 amino acids)

>Echvi_0653 Outer membrane protein/protective antigen OMA87 (Echinicola vietnamensis KMM 6221, DSM 17526)
MNRSLLVICLFLPVFIGITGVTQAQIRLGQSRYSQQKPIDILELNYAQPKQYKIAEIKAV
GLSTLDETAIVSLSGLKVGDEISVPGDAISNALKKLWQQGIIGDVKILVTKIEGDEIYLL
MDLTERPRFSIVEFTGVTSTQESELRDKVQIRGRVVREDVLNSSKRKITNYFVEKGYLNT
EVKIIQERDTSFPNSVKLRFDVDKKSKVKINEIAITGNEEIADGKLKKKMKKTNEHARVW
IFKDIFERLKNADAEHIGNSIARRNPVTDEEVKTYINKNFKLNFFSSSKFNKKEYRNDKD
NIINFYQTKGFRDAEILVDSVYNFDERTVNIDIDLEEGRKYYYRDISFTGNYIHDDAELL
AKLGIKSGDTYNKELLDKRLNYDPTKGDDISSLYQDDGYLFFQIDPVEVNVAADSIDIEM
RIFEGPQVTVNSVSIEGNERTSDHVVMREIRILPGQKFDRSLLVRTIRELSQIGYFDPET
INPDLRPNFEDATVDIVFQLEERPNDQIELSGGWGGFYGFVGTVGLVFNNFSVRNIGDFS
KWRPLPVGDGQKLSLRVQANGKSFQNYSFSFTEPWFGGKKPNALSVSLNHSVQRRIDIYN
QSNFGDELGFFKITGITVGLAKRVTWPDDYFSISNSLQYQVYEFDQYGTSFGLSFPTGKL
KSFVFNTTVSRSNVDSPIYPRMGSNISLGVNFTPPYASLNKNITEDSPDQEKYRWLEYHK
WMFDAKFYTPIFGSNKFVVSARTHMGFLGSYSKKVGMIPVERFVMGGDGMTFNNFSLGQD
IIGLRGYENQVLTPGYYSRGTPGNDEPFGGIVYNKYVMELRYLVSPNPSATIFLLGFAEA
GNNWGDYAEFNPYDLKKSAGFGARIFMPAFGLLGIDWGYGFDAAPGTYQPSGGMFHFTIG
QQFR