Protein Info for Echvi_0604 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted redox protein, regulator of disulfide bond formation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 46 to 60 (15 residues), see Phobius details PF02566: OsmC" amino acids 35 to 126 (92 residues), 54.5 bits, see alignment E=6.7e-19

Best Hits

KEGG orthology group: None (inferred from 50% identity to phe:Phep_0515)

Predicted SEED Role

"putative stress-induced protein OsmC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUA5 at UniProt or InterPro

Protein Sequence (134 amino acids)

>Echvi_0604 Predicted redox protein, regulator of disulfide bond formation (Echinicola vietnamensis KMM 6221, DSM 17526)
MPTIKSTYLENLRTSSQHLQSGKEIITDAPVDNKGKGEAFSPTDLVASALGSCMVTIMGI
VAHREGHELTGLNWEVTKVMDSNPRKIKEIIIDFNWEHPLEDPKLLQKLKNAARTCPVAL
SLSDEVVQSVTFNF