Protein Info for Echvi_0596 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein and related peptidoglycan-associated (lipo)proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF02412: TSP_3" amino acids 274 to 293 (20 residues), 16.8 bits, see alignment (E = 4.5e-07) PF00691: OmpA" amino acids 334 to 413 (80 residues), 58.3 bits, see alignment E=8.1e-20

Best Hits

Predicted SEED Role

"18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FSH1 at UniProt or InterPro

Protein Sequence (423 amino acids)

>Echvi_0596 Outer membrane protein and related peptidoglycan-associated (lipo)proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKLLLSTLMAGALAVGANAQNDFNKWSIDVNGGFNKPMAPMSPGYYSPSLNLGHADVGV
RYMFNEKFGAKVDYGFGKYQNADETPSFETNYYRVNLQGVANLGRVFNFETWTKTVGLLT
HFGAGFGRVTPQENEWADFKDDTYNFIFGFTPQVRLGNRVSLNGDISMLVAGRQNVAFDG
HTSVLPTDPGYYGANAVSWTGTLGLSFYLGGHDVHADWYVRQSQYATKDELESQIGEIKD
MLKDSDGDGVPDYLDKEPNTPAGARVDSHGRTLDSDGDGIPDHSDDCAFVPGPASNNGCP
VEEVDETDFFKKAINEGYVNVYYAFDSAKPLGYSSSSVNYVANFLKRNPGVNVAIKGYAD
EIGPDDYNMKLSEKRAKAVYDLLVAAGIDASRISYKGYGEDTSVDKQSADARQLARRASF
EVQ