Protein Info for Echvi_0567 in Echinicola vietnamensis KMM 6221, DSM 17526

Updated annotation (from data): outer membrane binding protein for glucose (SusD-like)
Rationale: Specifically important for utilization of D-glucose.
Original annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF14322: SusD-like_3" amino acids 114 to 232 (119 residues), 49.8 bits, see alignment E=5.7e-17 PF07980: SusD_RagB" amino acids 278 to 593 (316 residues), 165.7 bits, see alignment E=1.9e-52

Best Hits

KEGG orthology group: None (inferred from 61% identity to zpr:ZPR_3072)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVZ8 at UniProt or InterPro

Protein Sequence (594 amino acids)

>Echvi_0567 outer membrane binding protein for glucose (SusD-like) (Echinicola vietnamensis KMM 6221, DSM 17526)
MKYATIKYFILGMLLIGTLPSCSDEFLDQPALGALGDDVLATRDGVNKLLIGAYAALDGQ
GEGGTDALGGGNGWEAAPENWIYGTVAGGEASKGSFAGDQPAIDPIVNFYSSPSNGFFNT
KWKATFEGIKRTNNVLKLLPNVPELTDSERQDIAGQARFLRGHFYFELKKMFNMVPWIDE
TTEDPNQPNDQDIWPMIEADFQFAYENLPPTQPEFARANKWAAAAYLGKTYLYQKKYQEA
NTIFKEVIASGVNPAGTKYALLDNFSDNFDAAKENNAETVFDIQMVANSGTGTISNSNSG
NMLNFPYNSPFRCCGFYQPTQDLVNSFKTDPATGLPYLENYNQNPVKSDMGITSAQAFDP
YTGSLDPRLDWTVGRRGVPYHDWGHHPGQSWVRDQTYGGPYAPKKTIYWQATQNLYADQS
SWAPGTAINVHIIRFADIILMCAETEAHLGNLMEAMNLVNQIRERAMNPDGYLKTYIDES
APMDGFTNTPAANYTIELYTAAQFGSQEDALKAIYFERKLELAMEGHRFFDLVRWEIAEQ
ELNAYFDYQGSITQDVKDGSFSAPKNNYYPIPQRQIDLSVKDGEPMLKQNPGYN