Protein Info for Echvi_0549 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted glycosyl hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03663: Glyco_hydro_76" amino acids 169 to 241 (73 residues), 29.9 bits, see alignment E=2.2e-11 amino acids 278 to 408 (131 residues), 43.9 bits, see alignment E=1.2e-15

Best Hits

Predicted SEED Role

"putative alpha-1,6-mannanase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUW5 at UniProt or InterPro

Protein Sequence (481 amino acids)

>Echvi_0549 Predicted glycosyl hydrolase (Echinicola vietnamensis KMM 6221, DSM 17526)
MIQNRMMITIMSFVMLLFVACSESSSDPEPNSPPEEVSLAEQNILRAMELTDNAVSAHFT
GTGMAMARYYNPFTGVRSDETGSVWMYTAAIEAVNAVLHGLQAHKEHGNAALYDEHFEKY
AELLGQLYENADYYLGTFELVSYTQTKEWSVYGVNRGNAKGTANVAGIENVYDDQMWLVR
ELLESYKITGEAAYLEKAEYLTAYVLDGWDSTRNPDGTERGGITWGPGYVTKHACSNGPM
VSPLVWLHEIYEGKSDEITYRYIDADDKQTRKTMQVNKSDYYADFAQKVYNWQKDRLLRS
DGVYDDMRGGCSPGNPQTETVNGTEYRKGITCQDRVGPAISYNSGTMLSGAADLYRTTND
EVYLQDVKGLSDDSFQYFAKPDQSHEGYYSYDISGFNNWFNGVLMRGYVDVHPFYGAASE
YIGTFQQNLDYGYDNFLHEGFLPTNLLVGWSLTDNNNRTEGMFNFAFAAEYAVLSRYELT
K