Protein Info for Echvi_0504 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1053 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 796 to 817 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 83 to 105 (23 residues), 16.8 bits, see alignment (E = 2.1e-06) amino acids 130 to 153 (24 residues), 21.9 bits, see alignment (E = 4.7e-08) amino acids 551 to 573 (23 residues), 19.3 bits, see alignment (E = 3.3e-07) amino acids 594 to 616 (23 residues), 16.4 bits, see alignment (E = 2.8e-06) PF07495: Y_Y_Y" amino acids 731 to 791 (61 residues), 58.8 bits, see alignment 1.4e-19 PF07568: HisKA_2" amino acids 865 to 937 (73 residues), 74.5 bits, see alignment 2.1e-24 PF07536: HWE_HK" amino acids 865 to 924 (60 residues), 33.9 bits, see alignment 1.6e-11 PF02518: HATPase_c" amino acids 963 to 1050 (88 residues), 32.2 bits, see alignment E=4.5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUS6 at UniProt or InterPro

Protein Sequence (1053 amino acids)

>Echvi_0504 Signal transduction histidine kinase (Echinicola vietnamensis KMM 6221, DSM 17526)
MQKIILFYCSIILLFSVQGVRAQELLPVFREYGAAQGINQPFPYDILHSQSGYVWVAGEN
GLWKFDGQDFQHYAHEVKDSTSLAFDFVWVLFEDSKNNIWAGTYGGGVSKYDPRTDRFTN
YSYQKNNLNSLSDDQVRGIAEDPKGNIWLGTSNGLCQLNPDTGDFTRYTTADGLLSKTIR
QIKLSADHSRLFIATGNGLNILNLATMEFSGIKHLPDQPQSLSHFYIYDILEYPKGILWV
GTGGGLDKLNLKTGHITHYQSDADPTTLSHDVIFSIAHHPDHPDKLFVGTLDGLNVLHLR
KDTFSRIHSDQANPHKLQGDNIYKVSAGRDGSLWVAVYNEGIFQYHPHYHKFNSVDLVTD
ATDKYYSRVSSMIQHDEDEYLFTTYSGLFVQNIKTGKTAKYTISTGDQSSVNRLAMITRI
TPDIYWISTWAHFVYEWNHQTKSLRPLSHQTPEGHFLPEFNLPILHDSQERTWIGNSEKG
LFIWNPTTQTADPFPIGDTLIQGDNHDEFISYIFEDSQQRLWVGSQGGLNLLNETDHSFT
KFAHKDGDANSLSNNKVNHISEDHAGNLWVSTELGLSKFNPTDSSFTNFYTHDGLPSNVI
SSTLEDARHNIWVATAEGLSVLDREGNFRNYNQQDGLMDNYFIFRAAYKDSQGNLFFGSS
SGLEYFDPLKIPENTKPPSVQITGIDLFNTRITPGDSSGILDRAIPYTDEISLTHEQSVI
SFHFTALNLINGHKNKFQYQLKGYDKSWRPLTTQRSTTYTNLPPGHYTFQVKACNNDGFW
STQHASIGLTILPPWYLTWWFKTLFTIALLGTILYQYQRIEKNKERLENLVVQRTAEIQQ
QKEQIETQHDSLQEKNQRIESLLRELNHRVKNNLQLVSSILNLQSRSVKDKNAKVALIDG
RMRMQALSLLHQKLYVSDNDSQVNCKTYISDLFDQIEAAFKSRYKTLQYNFEGDDFSLGL
DKAIPLGLILNELITNSFKHVQDEKIEIHLSLKLEEQLVHFTFWDNGDGLTSHTIRESNS
FGWSMIRSLVLQLHGKLDIKESQNTKILLIFKK