Protein Info for Echvi_0496 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Beta-xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 44 to 317 (274 residues), 150.4 bits, see alignment E=3.7e-48

Best Hits

KEGG orthology group: None (inferred from 78% identity to zpr:ZPR_0918)

Predicted SEED Role

"Hypothetical glycoside hydrolase, family 43, similar to arabinosidase" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVT2 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Echvi_0496 Beta-xylosidase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKINLKDRMNLSKRLLLNLLLLFLGSALYAQEGDYYHHLTAKGNPLFTHKYTADPAALVV
GDTLWLYIGHDFEGGQKGYKLKDWLVFSTNDMANWTEHPVPLKIEDFAWAKSGDAYAGHV
AERNGKYYWYISTNWTGIGVAVADNPAGPFKDALGKPLLTNEDCFASDHSWACIDPAIFT
DDDGQPWIFWGNGECYYAKLKDNMVEIDGEIKQVNFDGFVFEEAPWIHKKDGIYYLTYAS
GFPEKIAYATASTIEGPWEYQGILNEIAGNSNTNHQSIVAFKDHWYFIYHNGGMQRGGTS
FSRSVCIDPLYYNFDGTLKRVQMTTEGIKPLY