Protein Info for Echvi_0486 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Beta-xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 714 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00251: Glyco_hydro_32N" amino acids 30 to 130 (101 residues), 26.3 bits, see alignment E=5.4e-10 PF04616: Glyco_hydro_43" amino acids 75 to 258 (184 residues), 46.6 bits, see alignment E=3e-16 amino acids 410 to 698 (289 residues), 182.9 bits, see alignment E=8.9e-58

Best Hits

KEGG orthology group: None (inferred from 60% identity to zpr:ZPR_0915)

Predicted SEED Role

"Hypothetical glycoside hydrolase, family 43, similar to arabinosidase" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVS4 at UniProt or InterPro

Protein Sequence (714 amino acids)

>Echvi_0486 Beta-xylosidase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKFLSNLTSLILSVGLLAACGGPSQVPEAYLFAYFTGNGPGQEAVHFALSKDGFDYRALN
NNRPVISADSISKRGGVRDPHILRGEDGTFYMVLTDLYVPEDGWTNQGMVFLKSDDLVHW
THQTVFIPELFPEEFGDVTRVWAPQTIYDAEKEKYMVYFSMKQGDAPDIIYYAYANDDFT
SLETLPQQLFFHPENKSCIDGDIVEKDGQYHLFFKTEGHGNGLKKAVASSLTGDYVMQDE
YLQQTKEAVEGSGIFKLNESDKYILMYDVYMKGSYQFTESTDLEHFEVIDDQVNMNFHPR
HGVVLPITLEEAKRLENAFGLDEQNWIVGTNDEQVYAHNVMVDEQKGTIYLPVKKATDLN
ALDPEFSLMVGYSLSPSGMQDFSQGPVTYTLSKPDGSTQEFQVEARKDNNPALKGYYADP
EIIYSQQTGKFHLYPTSDGFDSWSGTYFKSFSSENLTDWQDDGVILDLHKDVEWANRNAW
APCAIEKKIDGKYQYFYYFTAAQKIGVAVADHPAGPFKDSGKALVDFKPSGTNRGQEIDP
DVFHDPVSGKDFFYWGNGYLAAVPLNEDMVSFDQRKVKLLTPEDGTFREGTEVFFRDGKY
YFLWSENDTRDEDYRVRYAFADSPMGPLTIPEDNLVIAKAPEKGIYGTGHNSIIQIPGKD
EWYIVYHRFTRPHGIAMGRAAGFHREVCIDPLTFDEEGNIIRVEPTVEGIQASE