Protein Info for Echvi_0479 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted dehydrogenases and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01408: GFO_IDH_MocA" amino acids 5 to 124 (120 residues), 92.3 bits, see alignment E=3.8e-30 PF02894: GFO_IDH_MocA_C" amino acids 138 to 357 (220 residues), 36.2 bits, see alignment E=6e-13

Best Hits

KEGG orthology group: None (inferred from 77% identity to hhy:Halhy_6273)

Predicted SEED Role

"hypothetical oxidoreductase related to N-acetylglucosamine utilization" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FS50 at UniProt or InterPro

Protein Sequence (358 amino acids)

>Echvi_0479 Predicted dehydrogenases and related proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MTSPLKILVVGCGNMGASHALAYHQMAGFQICGLVARGDSKEILNQKLGADYPLFSDYKE
ALAQTQPDAVCISTYPDTHEEYALMALHAGCHVFIEKPLADTIAGSERIAQAAQKLHKKV
VVGYILRHHPSWIKFTEIAQGLGKPLVMRMNLNQQSHGRMWDVHRNLMKSLSPIVDCGVH
YIDVMCQMTQSKPKKVSAIGVRLTDDIPQDNYNYGQLQITFEDGSVGWYEAGWGPMVSET
AFFVKDVFGPKGSASIVAKEAGGSGKSDSVDDHTKTESIKIHHADINGQNEFTKPDEWVE
TADEPDHNALCQREQAYFLEAIHRDLDLSQHLEDAINSLKVAFACDESVKTGEMVEIQ