Protein Info for Echvi_0468 in Echinicola vietnamensis KMM 6221, DSM 17526
Annotation: SusD family.
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 54% identity to zpr:ZPR_1964)Predicted SEED Role
"SusD, outer membrane protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0FUP5 at UniProt or InterPro
Protein Sequence (581 amino acids)
>Echvi_0468 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526) MKNITFNKTLLVAAGMIAFSSCTTLEEEVLDESLTGTGQAEVISGSIAPVYGNLRYVWRH TNNFGLQEVASDEGILPYRGGTDWFDGGKFIAVHQHLMTPGNGLVGDTWSNITQTLSRAI LAEERLQLEVDNGNAAAQDPLYEMIAMKAYLNMLALDNWGLVFKKESSDDFSEILRGEAA VDYVEGELLSVVDVINSDKGPGRLNKYAVEALLARLYLNAAVYRDPYGTPDFRQEDMDKV IQYTNNIIDGPYELSAEYFDLFSDDNHNNPEIIFSLDQRGVLQTEHSRWAYWSMSGDQVP RPEFPSTRGTDAVAATPDFYQSWVDAYGEVDPADADARFFKENTVIPEDLRDLTGVNPNN DADHYYCVEATEFEVDRGILRNIIWGPRKDESGNIMTCDDGSVRIYPVINRRSSGADLRY VDHTLKVDFTTEGSLHNAGYRFSKYQFSHTAPNCCYYSSVDLVLIRLGEIYLMRAEAKLR NGDNAGALADVNTLRTSRDARPAQTPAPLDAVDLDVLFRESGFELYWEGHRRTYQIRYGK YEDSWTEKTDADVNKRLFPIPQRAMDGASSQPGFLEQNAGY