Protein Info for Echvi_0459 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Fic/DOC family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 PF13310: Virulence_RhuM" amino acids 61 to 133 (73 residues), 98.7 bits, see alignment E=3.5e-32 PF02661: Fic" amino acids 213 to 273 (61 residues), 37.3 bits, see alignment E=4.1e-13

Best Hits

KEGG orthology group: None (inferred from 60% identity to cao:Celal_3603)

Predicted SEED Role

"Putative DNA-binding protein in cluster with Type I restriction-modification system" in subsystem Restriction-Modification System

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVQ0 at UniProt or InterPro

Protein Sequence (323 amino acids)

>Echvi_0459 Fic/DOC family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MEKQIEIYQGIDGETQIEVNFQDDTVWLNQKQMGELFAKDTDTIGLHLKNIFSEKELDEN
STTEDFSVVRQEGKRNVRRTIKFYNLDAIISVGYRVNSKRGVQFRQWATTRLKDYLIKGY
AINEKRLAQKQQEVQTLKNGIRILSRAIEEKIDDTNFQWLGQFAKGLELLDDYDHENLDQ
KGISNVQAIYPTMSEYQEVIEMMKADFDSSVFGKEKDASFQSAVAQIAKGFGDEDFYPTL
EEKASTLLYLIVKNHGFVDGNKRIAAACFLLFLEKNGLLQNEQGQLIISNEAMASLTLFI
ASSKPEEVDVVKRLVVSVLNRSR