Protein Info for Echvi_0444 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Superfamily II DNA/RNA helicases, SNF2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1137 PF04851: ResIII" amino acids 676 to 831 (156 residues), 49.5 bits, see alignment E=9.3e-17 PF00176: SNF2-rel_dom" amino acids 680 to 957 (278 residues), 230.6 bits, see alignment E=4.4e-72 PF00270: DEAD" amino acids 702 to 834 (133 residues), 36.8 bits, see alignment E=6.9e-13 PF00271: Helicase_C" amino acids 971 to 1082 (112 residues), 79.7 bits, see alignment E=3.8e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVN5 at UniProt or InterPro

Protein Sequence (1137 amino acids)

>Echvi_0444 Superfamily II DNA/RNA helicases, SNF2 family (Echinicola vietnamensis KMM 6221, DSM 17526)
MDKELKKSNRHFAIPLKRKNLDVDLTKLFEKVSRKENIHKSDIWIKLETTLGKEGLLLRA
EIHYKQEAFLVKFIVYPDQLVILRNPRSETKGNKKLSLMEYYAIERIVTVNYLADITKYF
KHELYEFMMNFPKDYRISYGDITPTSYLGHIYMPKTGAHLNEAIHKMDTWARRESDLIMG
FCIPTFWWNEGIPLLFPFLGKTTKDKASIKSFISIDPERLALYTHLLSERQLALFEIANQ
LRKLSDESKGARQGIFKIPNCEDEPLMLKLWKRAFPLLKDEPFLYMFSKSKMPKDNIKPG
RREMHKVSFDETPVRIAFLLEEEEDRWVLSRRGYENGKITKANVSFPRFCPLFTMDDPRE
PKTIKAMGTLKDIRVGTLLSKELQMTIYKHPKSQDSFLERFLPTLCTYFPVEVKIPKKLG
LEVKIEMLTVESRWMELSQHHSKIMFVPYLKYREVEEPVDALQDGTLWARFEGDERTLQI
RDNKAERKLQELLLGLHPSFKGHFLNDHPELDMSVFMEGYWFLDAFSKLKEAGVEIKGLE
KLDGFDYHPYRPDIQMDVRAEKGWFDIGLQVRFGDKLLDMEQLRNAVVKQGGKVKLKDGK
KGVIPMDWQDMLSGMLSMGQEKNGKLSLSKVHFPMVAKLYGKNAPKDITEWVKTKRKRLE
KPAAKGNVKLPLVKATLRPYQKAGFYWMKALQEEEWGGILADDMGLGKTLQVLTLLLHTK
ETGGKQPNLIVATKTLLYNWEEQTAKFTPNLTICKYYGQSRKKLQKELRHHDLIITTYDT
VKSDIRFFGNMEFQYLITDEAQAIKNTGTDRYKAISLLNAQFRLALSGTPIENSVMDLYA
LMNFVNPGFFGTEANFRNIFLEKGRVDKSPRMEALQTAIKPFILRRTKEKVAKDLPKKTE
MVLYCEMEPEQRKAYESLRNYFKGELEDKISKEGLNKSNLKVLEGLMRLRQVCDHPVLVP
DHYNYKGNSAKMDALMEQILEKTGNHKLLVFSQFTGMLKLIAKALEKEGIQYSYLDGQTS
EISRRKAVQDFQEDESVRVFLLSLKAGGSGLNLTAGDYVFLVDPWWNPAVESQAIDRCYR
IGQDKKVMAYRMICKDTVEEKILQMQVEKKELAAGLIQAEKGLFKSLDTRGLLELFG