Protein Info for Echvi_0421 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1366 transmembrane" amino acids 349 to 366 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTT3 at UniProt or InterPro

Protein Sequence (1366 amino acids)

>Echvi_0421 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRKAISQPVQKKLFALSGNECSFPGCNERLFNLEEKVFLGEMCHIRAVSATGPRYDSNY
PKNDVDSFENLLVMCPNHHTTIDENIEKYTVEVLLNMKSEHERKNYELVGEHIGGNQIGE
INSKILEMFEAIDKFKLSNDQTIDQTDQLPKKITYPAPQNYIHRYVRPTRGDILEFGVES
KSLPNLILEEKRLTILGVGGSGKSIELDQLAYLHSNQESDLFPVKIRLNILSTQDLEELL
RLEFPEIDQVPQSRLLILLDALDEVHSSYIDVASTKIEILSKKYRDSKIVVSCRNNFYII
ESNKRKAKLDGFSSYLIQPLDFSSIYYYLQNKIDVPTEKFIFNIRKRKFYDLLYSPFFLV
YIVEIFETKKEYPSSIKSVFEYLIQQRIEKDYEKYANSGINIEDYSYRISQEIKGLAIIA
ECLGRNYLDDKTEVQRLIRDHDFLEVIKRTFLFNKSNEGLRWEFEHNNFQEFLAAQFLSE
LSFEEIQGFISFRPDFNKVKPAWLNTLSFLFSLIDPEDEKHDKLVDWIIKVEPDVLVRFE
KDKLELGLRERLFREIYEDFESKQIIIRNEKFESDDLANFVSDSKKIVEFLIQKIKQSND
RLVITEAVRILHYFEQIGEYLIEIREEIKRIIISTDFSEEIKYECFNALSKLKINDDLLT
DLILENNDLESSQYIRAGFYRYLETSSQPERYIKIILRGIEILENIGVTVNGIPNRGKPF
LSDEKYILKRLFDRINTSENVIPIIKWAYELDSPTSLHSEFFEFVKDLLAKAAEDYKNNH
EIFDHVLELLRSFSHRYYKEVGGYFRKFFNDTDTTAKAFKCLYTDWLIEEDRGFDLTYGM
AIVCDEVCLNFIVGEINSGNFKDPKTWQFRNILGVDGSREVYDLYQEELLKIDPEKYAIK
VIDYQAKRQSRRKRDVELLFSKKEFLSEVTNIFKEEGEIKFIKDDLYDWKRRNFNDEEMT
NNIVVETLRDFARNKEFVKLTEIEDLVNNSFRWRWFQIHNIVQYDKGIEKFEFTPDVTRF
IFTWVEDELKTANFKTAIEHRNNNSYSYRYVELYISYLIQRFDIEVSPPILLDLLNLECF
LLPGKINKVNLKGDEREPDTFDYVVEKLGFEKVSERALNNLRNSVMVPVVRQSHIKFCHD
FKVREAAPMILDEILNDNWEGYYQREFITKYIELSSDLDLLLDIFEVLPQESQIHASRLM
AEAGYLELKETLEREILNGDDEEAKLMFIQNLEILNESVAFEYEKEWILRNKRIPDRHGK
SINLKSAPIDGLIEILEDSIKFNYGSGMWSSRNDYLSALIEKGAQHEVSYLMVRDKIKKW
LQEYDNVKFLHYQLQNLEQKYYSNIPQTLTFEEAVQLVRQYQSPKL