Protein Info for Echvi_0400 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 851 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 68% identity to sli:Slin_4379)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUI6 at UniProt or InterPro

Protein Sequence (851 amino acids)

>Echvi_0400 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MFKSKILVLISLLLVLEGCSGISNKTPGQDPRPLVETSLKGKPFHNITLEASLKPFKQND
EAYFKKVASEMFTQWHSLLRHADTVSVMLWTADGSEILDYSGDLNQPLEWSKYIGNPNTE
HEVGSGPKELSLHERAYLYMENPPDFTYKDLKLIVNTLKETGEAITGKPVRIGATFDPGP
EFAKSPFKYEKHPEILEGSAMGHKSFVFSYATLNADDAAYAGFPNGIPGGTPFGTFFGRQ
SQHFLSDLDFDYIWFSNGFGFGMEPWASTGTIFTGTGFNADKLEDTRKKIIDFWSLFRKE
CSGFRIETRGTNLSTGVDLAKDGVDLKAIYEGDFNILPPPNSPWAALDGDFGLELVGYLS
RMAELPDDRYIFRYYTHDPWWLNSPWLDRYGREPHDIYLPMSVARINGKGEVALPTHLNF
LTIDDSYGNMPTQVPDEVIPHILKARYDAPTAPGPLVWVYPFEEYHQWARMQPDRLSEIY
YGDWFIRQAINNGLPLNTVISTGNFKSALQNQPDLFDESVLMTIVPDAGSEYEKQLMEFV
KSGGKVIIYGPSDRAGEEFLSLVNLRNDDPLEGEFSITGNYENDILKKKYPKTIRHDALF
SGGGLRSQVKDRKDPYTRVLVKMSQGNHSRDALWVRQHPGWKDGKVIYLRGTNSSHFEGE
RLLEPDDPAKYFTGPSYLRYALKECGLEYAVDKRDPAVKSPVLSISRSNNGFFFAGYVPN
TTVDHRFKFGQGAPVLLGYDTELQDGFATYSFPTAWNRECRVFVEQQNGIVSCKEMHSGE
LGITRRLQVSGLENATVRIYPDEGISEDEINFYLNSGYPWKTGKISSKKGEKEFGNSYVV
EGVTGELVVSW