Protein Info for Echvi_0344 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ComEC/Rec2-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 51 (19 residues), see Phobius details amino acids 63 to 80 (18 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 289 to 305 (17 residues), see Phobius details amino acids 311 to 327 (17 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 423 to 448 (26 residues), see Phobius details amino acids 455 to 475 (21 residues), see Phobius details amino acids 481 to 502 (22 residues), see Phobius details amino acids 509 to 527 (19 residues), see Phobius details PF13567: DUF4131" amino acids 35 to 191 (157 residues), 90.8 bits, see alignment E=8.1e-30 PF03772: Competence" amino acids 235 to 504 (270 residues), 186.9 bits, see alignment E=4.7e-59 TIGR00360: ComEC/Rec2-related protein" amino acids 257 to 434 (178 residues), 91.4 bits, see alignment E=3.9e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVF1 at UniProt or InterPro

Protein Sequence (652 amino acids)

>Echvi_0344 ComEC/Rec2-related protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MRFNEFPFLRYVLFFAAGIWCYMVLGSRVPDEVLWGAMAAVLLLYLIFAVLNGKNKRFTF
RSLFPFLAYLLLVMSGYAFSSLKDANNQADHLLRHSKIQGYMGEVLGVDEQKTSTFGNEL
AVRYVWTDEGYEKAHGKVLVYHRLETPLRPGEVVWVEGAPQRVAPPKNPNGFDYREFMAR
KQVYHQHFVGKALTRLGTVDRLSVAEPLLLLRERLGLLLERTFGDDHAVEVGKALLLGQK
ANLGEAVSEAYVTAGAMHVLAVSGLHVGIIYGFFLLFFKPAQLPRMKRIVYLGLVVLLIW
VYALLTGMSPSVMRAATMFTVLSLAQMQSRSPSVFNTLAISALLLMLFNPYIIFEVGFQL
SYAAMFGILVLQPAIVSIWLPQNKVMYYLWEITSVSIAAQVATFPLSVYYFHVFPNYFLL
SNLWVIPCAFMVMAVGLPFLLLSMIGWAWWPLGRLLELLLQLMNGGVFLFDALPFAQTEG
LYLNVITVFAMWGLVVCLYLWLKERKKAYAYGALVVVMGLIGTSWWTRFAAPSQQELYVY
SLGEGVAVDYHSSRLSGSFQYGVAEKDLHYQVDPHRLATNMQGDFPLKFTQEGSKTRVYL
PNGCLVTAREGKIWLSANTGVSAAYFDGDGWVQTPEEMRWSTKNGALRLIFE