Protein Info for Echvi_0301 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Short-chain dehydrogenases of various substrate specificities

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF00106: adh_short" amino acids 31 to 212 (182 residues), 162.1 bits, see alignment E=1.7e-51 PF13561: adh_short_C2" amino acids 37 to 224 (188 residues), 110.3 bits, see alignment E=1.8e-35 PF08659: KR" amino acids 70 to 183 (114 residues), 33 bits, see alignment E=8.5e-12

Best Hits

KEGG orthology group: None (inferred from 41% identity to srm:SRM_01064)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTH7 at UniProt or InterPro

Protein Sequence (257 amino acids)

>Echvi_0301 Short-chain dehydrogenases of various substrate specificities (Echinicola vietnamensis KMM 6221, DSM 17526)
MKCFITPKKGTIWGDFAHNRINLFTMVLAGKTAIVTGVSKGIGLEVVRRLLDKDVIVAGW
GRTRPSLEHERFHFFSCDVSDPSSVDQAYEETGKALGHDIRILVNNAGYGKIGKIDEMSI
EDWKGMFDVNVHGIFYVTRKVVPNMKAQDEGHILNVASIAGQNGVANMAGYCGTKHAVKG
ISHALYMELREFGIKVSTIYPGSVRTHFFDDIEGMDAHENMMRPEDVAMTIVQTLETHPN
YFVAEVECRPLRPKGKK