Protein Info for Echvi_0281 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 620 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF14322: SusD-like_3" amino acids 102 to 223 (122 residues), 75.3 bits, see alignment E=7.8e-25 PF07980: SusD_RagB" amino acids 309 to 618 (310 residues), 191.4 bits, see alignment E=2.9e-60

Best Hits

KEGG orthology group: None (inferred from 67% identity to hhy:Halhy_0651)

Predicted SEED Role

"putative outer membrane protein probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTG0 at UniProt or InterPro

Protein Sequence (620 amino acids)

>Echvi_0281 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MNKFKNITYLCLLAVSLWILSSCNADFVNTSPLDEVSEEDVWSDPALAEAAVTGTYVGLG
QGGFDEQMLASLTDEAIFTHPGRDITVITESRSNPAAPGWINNTLEWGNMYSYIRACNVA
IENLTEPLLTDQDLVDRLMGEAKFMRAYYSHQLLRYYGGFPIVDRAYELGEESYEIPRNT
WEECINFIVGDLDEAAALLEGKSMDSGRASRMAALALKSRVLLYAASDLHDIPTASSNSS
LISGYANPEYLGYTSGDRMSRWQRAKDAAKAVLDNDQGNLLNLSGPVSHEEGIQNYMNNS
LSKNGGEEELIFARYFINAKQENGGRQGLFNGPNGYNNWAGNTPIQHFVDDYEMMDGTEF
DWDNPEHAEAPYENRDARFYASLLYDGAQWKPRSSANQPKDPLGQIQTGQYEIMQNGSVG
THFGLDTRNSSIEDWNGSYTGYYFRKFIDPDPSIVDQNTWQEIPWPFLRYTEAVLNYVEA
CIELGQEEEARTWLNRIRYRVGMPAINDSGEALVERYRNERRIEMAYEEQRYHDCRRWMI
PEETLGRKANGINVVGTFKPGQSLDLYRYDPEIYNYSYEVTPIDPGKEDRQWLDKMYYLP
IHFNEMNRNAKLVQNPGYTE