Protein Info for Echvi_0255 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: 50S ribosomal protein L3, bacterial

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 TIGR03625: 50S ribosomal protein uL3" amino acids 3 to 208 (206 residues), 260.4 bits, see alignment E=5.9e-82 PF00297: Ribosomal_L3" amino acids 95 to 187 (93 residues), 58.6 bits, see alignment E=2.9e-20

Best Hits

Swiss-Prot: 67% identical to RL3_AMOA5: 50S ribosomal protein L3 (rplC) from Amoebophilus asiaticus (strain 5a2)

KEGG orthology group: K02906, large subunit ribosomal protein L3 (inferred from 70% identity to sli:Slin_5787)

Predicted SEED Role

"LSU ribosomal protein L3p (L3e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FV77 at UniProt or InterPro

Protein Sequence (210 amino acids)

>Echvi_0255 50S ribosomal protein L3, bacterial (Echinicola vietnamensis KMM 6221, DSM 17526)
MSGIIGKKVGMTSIFSADGRSVACTLIEAGPCVVTQVKNVETDGYSAVQLGYGERKEKNT
PKPLLGHFKKAGTTPKQKVVEFRDFRVEFEGQVDLGKSVKAGEVFAEGDFVDAIGTSKGK
GFQGVVKRHGFAGVGGSTHGQHNRQRHPGAIGACSWPSRVFKGLRMAGRTGGSRVKVLNL
KVLKVYAEKNLILVSGSVPGPKNSYVILEK