Protein Info for Echvi_0252 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ribosomal protein L2, bacterial/organellar

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 TIGR01171: ribosomal protein uL2" amino acids 3 to 273 (271 residues), 397.3 bits, see alignment E=1.7e-123 PF00181: Ribosomal_L2" amino acids 42 to 118 (77 residues), 98.7 bits, see alignment E=1.6e-32 PF03947: Ribosomal_L2_C" amino acids 126 to 248 (123 residues), 185 bits, see alignment E=5.3e-59

Best Hits

Swiss-Prot: 69% identical to RL2_AMOA5: 50S ribosomal protein L2 (rplB) from Amoebophilus asiaticus (strain 5a2)

KEGG orthology group: K02886, large subunit ribosomal protein L2 (inferred from 73% identity to lby:Lbys_1827)

MetaCyc: 57% identical to 50S ribosomal subunit protein L2 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L2p (L8e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTE0 at UniProt or InterPro

Protein Sequence (274 amino acids)

>Echvi_0252 ribosomal protein L2, bacterial/organellar (Echinicola vietnamensis KMM 6221, DSM 17526)
MAVKKLKPVTPGTRYRLAPTFDEVTKSKPEKSLLAPLKRSGGRNNSGKMTARYIGGGHKK
RLRIVDYKRNKDGVPATVKGIEYDPNRTARLALLYYADGAKAYIVAPEGLTAGDTVISGE
HVAPEVGNNLPMMNIPLGTIIHNVELKPGKGGTLARSAGSYAQLVAKEGKYVAIKLPSGE
LRLILGVCKATVGTVSNADHMNVVLGKAGRNRWLGKRPRVRGVAMNPVDHPMGGGEGRSS
GGHPRSRTGLLAKGKKTRTPKKYSNKFIISKRSK