Protein Info for Echvi_0218 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: luciferase family oxidoreductase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 TIGR03558: luciferase family oxidoreductase, group 1" amino acids 16 to 335 (320 residues), 434.5 bits, see alignment E=1.3e-134 PF00296: Bac_luciferase" amino acids 18 to 308 (291 residues), 139.1 bits, see alignment E=1.1e-44

Best Hits

Swiss-Prot: 54% identical to YVBT_BACSU: Uncharacterized protein YvbT (yvbT) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 61% identity to phe:Phep_2368)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FRH9 at UniProt or InterPro

Protein Sequence (345 amino acids)

>Echvi_0218 luciferase family oxidoreductase, group 1 (Echinicola vietnamensis KMM 6221, DSM 17526)
MIGKMKQSKPLDEVAFSVLDLAIIKEQHDAADAFERSLDLAKHTEKWGYKRFWLAEHHNM
VSVGSSATAVLIGHIAGGTRHIRVGSGGIMLPNHAPLMVAEQFGTLASLYPDRIDLGLGR
APGTDQTTARALRRDRLETVEEFPRDLEELQLYLSDDNIDGKVRAIPGEGLDIPIYLLGS
SMSSARLAAKKGLPYAFASHFAPAQFLDAIRYYREHFEPSEYLKSPYVISCVNVIAAETD
EKAHQMATSFYQMALGIVRRKSYPLRPPVDTMEGIWTEAEAAAINQMMACSFVGDATSVR
GELEHFQEITQVDEIMVCSHIYDHGERLRSYELAASCFKKKLVTP