Protein Info for Echvi_0193 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: NAD dependent epimerase/dehydratase family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 transmembrane" amino acids 246 to 264 (19 residues), see Phobius details PF01370: Epimerase" amino acids 4 to 210 (207 residues), 44.5 bits, see alignment E=1.3e-15 PF13460: NAD_binding_10" amino acids 6 to 108 (103 residues), 36.4 bits, see alignment E=4.9e-13

Best Hits

KEGG orthology group: None (inferred from 53% identity to sli:Slin_5717)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUY8 at UniProt or InterPro

Protein Sequence (320 amino acids)

>Echvi_0193 NAD dependent epimerase/dehydratase family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MQTILGSGGVIANELARELRTYTTGIRLVSRNPQKINQDDETISADLTQADQVKKAVKGS
SIVYLTVGLKYKARIWESAWPKIMRNVIEACTQHQSKLVFFDNIYMYDPNYIGHMSEDTP
IRPVSRKGAVRAKIADMVLESTSKGNLEAIIARSADFYGPHITLNSILTELAFKPLAKGG
TAKWLGDAHQPHAFTFTPDAGKALALLGNTEDAYNQVWHLPTASNPPTGKEWIYLIAKEM
SKSPKYQVLAPWFFSVSGLFVPFMRELKEMLYQYERPYVFDSTKFQENFFFKPTKYRDGI
KNIIHEEFPSLEKKMDDIRY